BICRAL protein (Phasianus colchicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BICRAL

BRD4 interacting chromatin remodeling complex associated protein like. (891 aa)

Predicted Functional Partners:

ARID1B

0.540

ENSPCLP00000008300

0.540

ENSPCLP00000011692

0.540

SMARCE1

0.540

PBRM1

0.540

BICRA

0.540

ENSPCLP00000019613

0.540

ACTL6A

0.432

SMARCC2

0.427

SMARCC1

0.427

Your Current Organism:

Phasianus colchicus

NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTL6A	ARID1B	ENSPCLP00000024992	ENSPCLP00000002858	Actin like 6A.	AT-rich interaction domain 1B.	0.856
ACTL6A	BICRAL	ENSPCLP00000024992	ENSPCLP00000001734	Actin like 6A.	BRD4 interacting chromatin remodeling complex associated protein like.	0.432
ACTL6A	ENSPCLP00000008300	ENSPCLP00000024992	ENSPCLP00000008300	Actin like 6A.	annotation not available	0.856
ACTL6A	ENSPCLP00000011692	ENSPCLP00000024992	ENSPCLP00000011692	Actin like 6A.	annotation not available	0.856
ACTL6A	ENSPCLP00000019613	ENSPCLP00000024992	ENSPCLP00000019613	Actin like 6A.	annotation not available	0.856
ACTL6A	PBRM1	ENSPCLP00000024992	ENSPCLP00000016431	Actin like 6A.	Polybromo 1.	0.996
ACTL6A	SMARCC1	ENSPCLP00000024992	ENSPCLP00000018577	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.960
ACTL6A	SMARCC2	ENSPCLP00000024992	ENSPCLP00000016697	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.960
ACTL6A	SMARCE1	ENSPCLP00000024992	ENSPCLP00000011819	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.998
ARID1B	ACTL6A	ENSPCLP00000002858	ENSPCLP00000024992	AT-rich interaction domain 1B.	Actin like 6A.	0.856
ARID1B	BICRA	ENSPCLP00000002858	ENSPCLP00000019352	AT-rich interaction domain 1B.	BRD4 interacting chromatin remodeling complex associated protein.	0.543
ARID1B	BICRAL	ENSPCLP00000002858	ENSPCLP00000001734	AT-rich interaction domain 1B.	BRD4 interacting chromatin remodeling complex associated protein like.	0.540
ARID1B	ENSPCLP00000008300	ENSPCLP00000002858	ENSPCLP00000008300	AT-rich interaction domain 1B.	annotation not available	0.900
ARID1B	ENSPCLP00000011692	ENSPCLP00000002858	ENSPCLP00000011692	AT-rich interaction domain 1B.	annotation not available	0.540
ARID1B	ENSPCLP00000019613	ENSPCLP00000002858	ENSPCLP00000019613	AT-rich interaction domain 1B.	annotation not available	0.540
ARID1B	PBRM1	ENSPCLP00000002858	ENSPCLP00000016431	AT-rich interaction domain 1B.	Polybromo 1.	0.909
ARID1B	SMARCC1	ENSPCLP00000002858	ENSPCLP00000018577	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.834
ARID1B	SMARCC2	ENSPCLP00000002858	ENSPCLP00000016697	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.881
ARID1B	SMARCE1	ENSPCLP00000002858	ENSPCLP00000011819	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.935
BICRA	ARID1B	ENSPCLP00000019352	ENSPCLP00000002858	BRD4 interacting chromatin remodeling complex associated protein.	AT-rich interaction domain 1B.	0.543