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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRERF1Transcriptional regulating factor 1. (1162 aa)    
Predicted Functional Partners:
DNTTIP1
Deoxynucleotidyltransferase terminal interacting protein 1.
    
 
 0.768
ENSPCLP00000009242
annotation not available
    
 
0.593
ZBTB17
Zinc finger and BTB domain containing 17.
    
 
 0.582
BRPF1
Bromodomain and PHD finger containing 1.
      
 0.567
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
      
 0.567
HSDL2
Hydroxysteroid dehydrogenase like 2.
      
 0.567
RAPGEF3
Rap guanine nucleotide exchange factor 3.
      
 0.567
NAAA
N-acylethanolamine acid amidase.
      
 0.554
LPCAT2
Lysophosphatidylcholine acyltransferase 2.
      
 0.554
ENSPCLP00000022841
annotation not available
      
 0.532
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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