Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM193AFamily with sequence similarity 193 member A. (1451 aa)    
Predicted Functional Partners:
DCTN2
Dynactin subunit 2.
   
 0.908
DCTN3
Dynactin subunit 3.
   
 0.886
DCTN4
Dynactin subunit 4.
    
 0.869
DCTN5
Dynactin subunit 5.
    
 0.855
DCTN6
Dynactin subunit 6.
    
 0.849
MDM4
MDM4 regulator of p53.
    
   0.717
DYNC1LI1
Dynein cytoplasmic 1 light intermediate chain 1.
   
 0.649
DYNC1LI2
Dynein cytoplasmic 1 light intermediate chain 2.
   
 0.649
TBC1D31
TBC1 domain family member 31.
   
 0.620
PAFAH1B1
Platelet activating factor acetylhydrolase 1b regulatory subunit 1.
    
 0.607
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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