Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PROX1Prospero homeobox 1. (736 aa)    
Predicted Functional Partners:
LYVE1
Lymphatic vessel endothelial hyaluronan receptor 1.
      
 0.585
IFT80
Intraflagellar transport 80.
      
 0.567
HDAC3
Histone deacetylase 3.
    
   0.564
UNCX
UNC homeobox.
      
 0.558
FOXG1
Forkhead box G1.
      
 0.557
SERPINH1
Serpin family H member 1.
      
 0.554
VEGFC
Vascular endothelial growth factor C.
      
 0.551
ENSPCLP00000005963
annotation not available
    
   0.543
RANBP3
RAN binding protein 3.
      
 0.475
ENSPCLP00000012810
annotation not available
      
 0.474
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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