SCAPER protein (Phasianus colchicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCAPER

S-phase cyclin A associated protein in the ER. (1417 aa)

Predicted Functional Partners:

CCNA2

0.610

CEP126

0.569

DNMBP

0.569

PNO1

0.569

IARS2

0.562

OPA1

0.562

ENSPCLP00000018931

0.562

ERLIN2

0.555

DNAJB13

0.554

ZNF703

0.553

Your Current Organism:

Phasianus colchicus

NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNA2	SCAPER	ENSPCLP00000013183	ENSPCLP00000002006	Cyclin A2.	S-phase cyclin A associated protein in the ER.	0.610
CEP126	DNAJB13	ENSPCLP00000008742	ENSPCLP00000020673	Centrosomal protein 126.	DnaJ heat shock protein family (Hsp40) member B13.	0.589
CEP126	ERLIN2	ENSPCLP00000008742	ENSPCLP00000012541	Centrosomal protein 126.	ER lipid raft associated 2.	0.565
CEP126	SCAPER	ENSPCLP00000008742	ENSPCLP00000002006	Centrosomal protein 126.	S-phase cyclin A associated protein in the ER.	0.569
CEP126	ZNF703	ENSPCLP00000008742	ENSPCLP00000012544	Centrosomal protein 126.	Zinc finger protein 703.	0.567
DNAJB13	CEP126	ENSPCLP00000020673	ENSPCLP00000008742	DnaJ heat shock protein family (Hsp40) member B13.	Centrosomal protein 126.	0.589
DNAJB13	ERLIN2	ENSPCLP00000020673	ENSPCLP00000012541	DnaJ heat shock protein family (Hsp40) member B13.	ER lipid raft associated 2.	0.476
DNAJB13	SCAPER	ENSPCLP00000020673	ENSPCLP00000002006	DnaJ heat shock protein family (Hsp40) member B13.	S-phase cyclin A associated protein in the ER.	0.554
DNAJB13	ZNF703	ENSPCLP00000020673	ENSPCLP00000012544	DnaJ heat shock protein family (Hsp40) member B13.	Zinc finger protein 703.	0.477
DNMBP	ENSPCLP00000018931	ENSPCLP00000012646	ENSPCLP00000018931	Dynamin binding protein.	annotation not available	0.567
DNMBP	IARS2	ENSPCLP00000012646	ENSPCLP00000001837	Dynamin binding protein.	isoleucyl-tRNA synthetase 2, mitochondrial.	0.553
DNMBP	OPA1	ENSPCLP00000012646	ENSPCLP00000009572	Dynamin binding protein.	OPA1 mitochondrial dynamin like GTPase.	0.585
DNMBP	SCAPER	ENSPCLP00000012646	ENSPCLP00000002006	Dynamin binding protein.	S-phase cyclin A associated protein in the ER.	0.569
ENSPCLP00000018931	DNMBP	ENSPCLP00000018931	ENSPCLP00000012646	annotation not available	Dynamin binding protein.	0.567
ENSPCLP00000018931	IARS2	ENSPCLP00000018931	ENSPCLP00000001837	annotation not available	isoleucyl-tRNA synthetase 2, mitochondrial.	0.476
ENSPCLP00000018931	OPA1	ENSPCLP00000018931	ENSPCLP00000009572	annotation not available	OPA1 mitochondrial dynamin like GTPase.	0.545
ENSPCLP00000018931	SCAPER	ENSPCLP00000018931	ENSPCLP00000002006	annotation not available	S-phase cyclin A associated protein in the ER.	0.562
ERLIN2	CEP126	ENSPCLP00000012541	ENSPCLP00000008742	ER lipid raft associated 2.	Centrosomal protein 126.	0.565
ERLIN2	DNAJB13	ENSPCLP00000012541	ENSPCLP00000020673	ER lipid raft associated 2.	DnaJ heat shock protein family (Hsp40) member B13.	0.476
ERLIN2	SCAPER	ENSPCLP00000012541	ENSPCLP00000002006	ER lipid raft associated 2.	S-phase cyclin A associated protein in the ER.	0.555