Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB28RAB28, member RAS oncogene family. (223 aa)    
Predicted Functional Partners:
PDE6D
Phosphodiesterase 6D.
   
 
 0.870
DACH1
Dachshund family transcription factor 1.
      
 0.748
SPON2
Spondin 2.
      
 0.725
DENND3
DENN domain containing 3.
    
 0.658
DENND1B
DENN domain containing 1B.
     
 0.656
C8orf37
Chromosome 8 open reading frame 37.
      
 0.647
TRIM23
Tripartite motif containing 23.
   
 0.620
TMEM51
Transmembrane protein 51.
    
 
 0.613
FRMPD1
FERM and PDZ domain containing 1.
      
 0.602
GDI2
GDP dissociation inhibitor 2.
    
 0.602
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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