Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCT4Chaperonin containing TCP1 subunit 4. (543 aa)    
Predicted Functional Partners:
CCT2
Chaperonin containing TCP1 subunit 2.
   
0.999
CCT5
Chaperonin containing TCP1 subunit 5.
  
0.999
CCT6B
Chaperonin containing TCP1 subunit 6B.
   
 0.999
TCP1
T-complex 1.
   
 0.999
CCT7
Chaperonin containing TCP1 subunit 7.
  
0.999
CCT3
Chaperonin containing TCP1 subunit 3.
  
0.999
CCT8
Chaperonin containing TCP1 subunit 8.
   
 0.999
ERMARD
ER membrane associated RNA degradation.
   
 0.987
MKKS
McKusick-Kaufman syndrome.
   
 0.987
BBS10
Bardet-Biedl syndrome 10.
   
 0.987
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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