Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC59Coiled-coil domain containing 59. (205 aa)    
Predicted Functional Partners:
TTF1
Transcription termination factor 1.
     
  0.969
DMTF1
Cyclin D binding myb like transcription factor 1.
     
  0.908
RPL26
Ribosomal protein L26.
   
   0.875
LLPH
LLP homolog, long-term synaptic facilitation factor.
   
    0.810
RPL36AL
Ribosomal protein L36a like.
    
   0.747
RPL3
Ribosomal protein L3.
    
   0.717
RPL3L
Ribosomal protein L3 like.
    
   0.692
RPAP2
RNA polymerase II associated protein 2.
      
 0.653
GTF2H3
General transcription factor IIH subunit 3.
      
 0.614
UBAP1L
Ubiquitin associated protein 1 like.
      
 0.614
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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