Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX54DEAD-box helicase 54. (828 aa)    
Predicted Functional Partners:
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.993
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.993
PES1
Pescadillo ribosomal biogenesis factor 1.
   
  0.990
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.990
DDX27
DEAD-box helicase 27.
  
 
0.989
GTPBP4
GTP binding protein 4.
   
 
 0.988
DDX24
DEAD-box helicase 24.
  
 
0.986
PUM3
Pumilio RNA binding family member 3.
   
 
 0.986
EBNA1BP2
EBNA1 binding protein 2.
   
 0.985
RBM34
RNA binding motif protein 34.
   
 0.984
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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