Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PKNOX1PBX/knotted 1 homeobox 1. (436 aa)    
Predicted Functional Partners:
HOXB1
Homeobox B1.
    
 0.877
PBX1
PBX homeobox 1.
    
 0.867
ENSPCLP00000011517
annotation not available
    
 0.867
PBX4
PBX homeobox 4.
    
 0.867
ENSPCLP00000013882
annotation not available
   
   0.864
BORCS6
BLOC-1 related complex subunit 6.
    
   0.692
ENSPCLP00000009033
annotation not available
    
   0.590
HMGB2
High mobility group box 2.
    
   0.590
HMGB1
High mobility group box 1.
    
   0.590
SHOX
Short stature homeobox.
    
 
 0.572
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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