STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP1Matrix metallopeptidase 1. (466 aa)    
Predicted Functional Partners:
ENSPCLP00000008765
annotation not available
  
 
0.962
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.866
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.861
MMP9
Matrix metallopeptidase 9.
   
 
0.744
TNN
Tenascin N.
   
 0.673
TNR
Tenascin R.
    
 0.657
TNC
Tenascin C.
    
 0.657
ENSPCLP00000016016
annotation not available
    
 0.657
ENSPCLP00000008764
annotation not available
  
 
0.615
COL1A1
Collagen type I alpha 1 chain.
   
 0.605
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.