VIM protein (Phasianus colchicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VIM

Vimentin. (460 aa)

Predicted Functional Partners:

ENSPCLP00000007255

0.874

ENSPCLP00000021533

0.725

ENSPCLP00000021539

0.725

ENSPCLP00000020936

0.696

PCYT1A

0.652

BANF1

0.652

CASP7

0.650

GFAP

0.642

CASP6

0.635

TCAP

0.629

Your Current Organism:

Phasianus colchicus

NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BANF1	GFAP	ENSPCLP00000020044	ENSPCLP00000013235	Barrier to autointegration factor 1.	Glial fibrillary acidic protein.	0.695
BANF1	VIM	ENSPCLP00000020044	ENSPCLP00000023834	Barrier to autointegration factor 1.	Vimentin.	0.652
CASP6	CASP7	ENSPCLP00000014579	ENSPCLP00000010974	Caspase 6.	Caspase 7.	0.592
CASP6	VIM	ENSPCLP00000014579	ENSPCLP00000023834	Caspase 6.	Vimentin.	0.635
CASP7	CASP6	ENSPCLP00000010974	ENSPCLP00000014579	Caspase 7.	Caspase 6.	0.592
CASP7	VIM	ENSPCLP00000010974	ENSPCLP00000023834	Caspase 7.	Vimentin.	0.650
ENSPCLP00000007255	VIM	ENSPCLP00000007255	ENSPCLP00000023834	annotation not available	Vimentin.	0.874
ENSPCLP00000020936	VIM	ENSPCLP00000020936	ENSPCLP00000023834	annotation not available	Vimentin.	0.696
ENSPCLP00000021533	VIM	ENSPCLP00000021533	ENSPCLP00000023834	annotation not available	Vimentin.	0.725
ENSPCLP00000021539	VIM	ENSPCLP00000021539	ENSPCLP00000023834	annotation not available	Vimentin.	0.725
GFAP	BANF1	ENSPCLP00000013235	ENSPCLP00000020044	Glial fibrillary acidic protein.	Barrier to autointegration factor 1.	0.695
GFAP	TCAP	ENSPCLP00000013235	ENSPCLP00000012065	Glial fibrillary acidic protein.	Titin-cap.	0.453
GFAP	VIM	ENSPCLP00000013235	ENSPCLP00000023834	Glial fibrillary acidic protein.	Vimentin.	0.642
PCYT1A	VIM	ENSPCLP00000011555	ENSPCLP00000023834	Phosphate cytidylyltransferase 1, choline, alpha.	Vimentin.	0.652
TCAP	GFAP	ENSPCLP00000012065	ENSPCLP00000013235	Titin-cap.	Glial fibrillary acidic protein.	0.453
TCAP	VIM	ENSPCLP00000012065	ENSPCLP00000023834	Titin-cap.	Vimentin.	0.629
VIM	BANF1	ENSPCLP00000023834	ENSPCLP00000020044	Vimentin.	Barrier to autointegration factor 1.	0.652
VIM	CASP6	ENSPCLP00000023834	ENSPCLP00000014579	Vimentin.	Caspase 6.	0.635
VIM	CASP7	ENSPCLP00000023834	ENSPCLP00000010974	Vimentin.	Caspase 7.	0.650
VIM	ENSPCLP00000007255	ENSPCLP00000023834	ENSPCLP00000007255	Vimentin.	annotation not available	0.874