STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca023559Chromatin-remodeling complex ATPase chain. (686 aa)    
Predicted Functional Partners:
RPN11
26S proteasome non-ATPase regulatory subunit 14.
 
  
 0.910
MA16_Dca004831
RuvB-like helicase; Belongs to the RuvB family.
    
 0.754
ARP5
Actin-related protein 5; Belongs to the actin family.
    
 0.733
ARP4
Actin-related protein 4; Belongs to the actin family.
   
 0.733
SYD-3
Chromatin structure-remodeling complex protein SYD.
  
0.704
HMGB9
High mobility group B protein 9.
    
 0.674
HMGB15
High mobility group B protein 15.
    
 0.674
SYD
Chromatin structure-remodeling complex protein SYD.
  
0.674
MA16_Dca016818
YL1_C domain-containing protein.
    
 0.659
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.651
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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