STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca028784Polyubiquitin. (149 aa)    
Predicted Functional Partners:
MA16_Dca016087
ZZ-type domain-containing protein.
   
 0.941
MA16_Dca010420
Uncharacterized protein.
   
 0.941
UPL4
E3 ubiquitin-protein ligase UPL4.
   
 0.873
PRT1
E3 ubiquitin-protein ligase PRT1.
   
 0.850
PRT1-3
E3 ubiquitin-protein ligase PRT1.
   
 0.850
PRT1-4
E3 ubiquitin-protein ligase PRT1.
   
 0.850
UPL3
E3 ubiquitin-protein ligase UPL3.
   
 0.846
RPS25E
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.835
RPS21
40S ribosomal protein S21.
   
  0.821
RPL5-3
60S ribosomal protein L5.
   
 0.808
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.