STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca027670F-box/WD-40 repeat-containing protein. (565 aa)    
Predicted Functional Partners:
RBX1A
RING-box protein 1a.
    
 0.939
CUL3A
Cullin-3A; Belongs to the cullin family.
    
 0.825
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.825
CUL3A-2
Cullin-3A; Belongs to the cullin family.
    
 0.825
RPL2
60S ribosomal protein L2, mitochondrial.
    
 0.771
rpl2-A
50S ribosomal protein L2, chloroplastic.
    
 0.771
SKP1B
SKP1-like protein 1B; Belongs to the SKP1 family.
    
 0.734
SKP1A
SKP1-like protein 1A; Belongs to the SKP1 family.
    
 0.734
MA16_Dca024542
Uncharacterized protein.
    
 0.734
ASK4
SKP1-like protein 4; Belongs to the SKP1 family.
    
 0.734
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.