STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca019687Uncharacterized protein. (391 aa)    
Predicted Functional Partners:
MA16_Dca012320
Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.991
MA16_Dca018541
Glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.924
MA16_Dca023959
Glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.903
VALRS-5
Valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.897
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.894
MA16_Dca017541
Prolyl-tRNA synthetase.
  
 0.828
MA16_Dca004248
Prolyl-tRNA synthetase.
  
 0.828
MA16_Dca004446
Prolyl-tRNA synthetase.
  
 0.828
MA16_Dca005047
Putative methionine--tRNA ligase.
  
 0.776
MA16_Dca017599
Putative methionine--tRNA ligase.
  
 0.776
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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