STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca02814733 kDa ribonucleoprotein, chloroplastic. (276 aa)    
Predicted Functional Partners:
SPIN1
KH domain-containing protein SPIN1.
  
 
 
 0.581
MA16_Dca020654
Zinc finger CCCH domain-containing protein 42.
  
 
 
 0.565
RBG3-4
Glycine-rich RNA-binding protein 3, mitochondrial.
  
 
   0.531
PAB2-7
Polyadenylate-binding protein 2.
  
 
  0.529
GRP10-3
Glycine-rich RNA-binding protein 10.
  
     0.524
GRP10-4
Glycine-rich RNA-binding protein 10.
  
     0.524
RBG4-6
Glycine-rich RNA-binding protein 4, mitochondrial.
  
     0.521
RBG4-2
Glycine-rich RNA-binding protein 4, mitochondrial.
  
     0.499
MA16_Dca019153
Zinc finger CCCH domain-containing protein 25.
  
 
0.499
SR33-2
Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.
  
 0.493
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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