STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XRN35'-3' exoribonuclease 3. (141 aa)    
Predicted Functional Partners:
MA16_Dca005888
Decapping nuclease Dom3z like, chloroplastic.
   
 
 0.800
MA16_Dca004312
CID domain-containing protein.
    
 
 0.670
MA16_Dca013246
CID domain-containing protein.
    
 
 0.670
GEK1
D-aminoacyl-tRNA deacylase.
    
 
 0.600
MA16_Dca004663
Bms1-type G domain-containing protein.
   
 
 0.583
MA16_Dca003007
Uncharacterized protein.
   
  0.560
rps1-2
30S ribosomal protein S1, chloroplastic.
   
 0.558
MA16_Dca003958
U3snoRNP10 domain-containing protein.
   
 
  0.553
NOP5-2-2
Putative nucleolar protein 5-2.
   
 
 0.544
MA16_Dca010056
RRP7 domain-containing protein.
   
  0.525
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.