STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca022532HRDC domain-containing protein. (618 aa)    
Predicted Functional Partners:
MA16_Dca007672
Uncharacterized protein.
   
 0.961
MA16_Dca005221
U3 small nucleolar RNA-associated protein 18 like.
   
 0.959
MA16_Dca018530
Uncharacterized protein.
   
 0.957
MA16_Dca007039
Uncharacterized protein.
   
 0.955
MA16_Dca003774
Uncharacterized protein.
   
 0.955
MA16_Dca004666
Sas10 domain-containing protein.
   
 0.954
RRP46-3
Exosome complex exonuclease RRP46 like.
   
 0.952
MA16_Dca003086
S1 domain-containing protein.
   
 0.952
MA16_Dca024800
Uncharacterized protein.
   
 0.951
MA16_Dca004663
Bms1-type G domain-containing protein.
   
 0.948
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.