STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC4Structural maintenance of chromosomes protein 4; Belongs to the universal ribosomal protein uS19 family. (1038 aa)    
Predicted Functional Partners:
MA16_Dca027527
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
   
 0.985
SMC2-1
Structural maintenance of chromosomes protein 2-1.
   
0.985
MA16_Dca025870
FoP_duplication domain-containing protein.
   
 0.981
YDA
Mitogen-activated protein kinase kinase kinase YODA.
   
 0.954
CAPH
Condensin complex subunit 2.
   
 0.954
SMC4-2
Structural maintenance of chromosomes protein 4.
 
     0.936
MA16_Dca016816
Uncharacterized protein.
   
 0.925
MA16_Dca020466
N-acetyltransferase.
   
 0.901
MA16_Dca022375
Sister chromatid cohesion protein.
   
 0.893
CAPH2
Condensin-2 complex subunit H2.
   
 0.891
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.