STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca024199Serine--tRNA ligase. (542 aa)    
Predicted Functional Partners:
MA16_Dca008555
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.759
MA16_Dca012320
Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.729
MA16_Dca005678
Uncharacterized protein.
     
 0.727
MA16_Dca025148
Lysine--tRNA ligase.
  
 
 0.706
VALRS-2
Valine--tRNA ligase.
  
  
 0.676
MA16_Dca006904
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
 
 0.660
LYSRS
Lysine--tRNA ligase.
   
  
 0.656
GLYRS-1
Glycine--tRNA ligase 1, mitochondrial.
   
  
 0.654
GLYRS-1-2
Glycine--tRNA ligase 1, mitochondrial.
   
  
 0.654
MA16_Dca001664
SAGA-associated factor 11.
    
 
 0.652
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.