STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca024520Putative 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic. (209 aa)    
Predicted Functional Partners:
MA16_Dca015610
Putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial.
  
 0.799
MA16_Dca028048
Transaldolase (S).
  
 0.726
MA16_Dca000913
Transaldolase.
  
 0.726
MA16_Dca001955
Transaldolase.
  
 0.726
MA16_Dca018509
Ribulose-phosphate 3-epimerase, chloroplastic.
  
 0.603
MA16_Dca000810
Ribulose-phosphate 3-epimerase, cytoplasmic isoform.
  
 0.603
MA16_Dca002542
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
 
 0.602
MA16_Dca019708
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
 
 0.602
MA16_Dca015557
Xylulokinase.
  
 
 0.602
DRT102
DNA-damage-repair/toleration protein DRT102.
  
 
 0.598
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.