STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic. (860 aa)    
Predicted Functional Partners:
ISPF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.923
ISPH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.
  
  
 0.874
DXR
1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic.
  
  
 0.788
ISPE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic.
 
   
 0.785
ISPD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic.
  
   
 0.752
MA16_Dca011090
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.749
RPS1
30S ribosomal protein S1, chloroplastic.
  
 
 0.726
rps1
30S ribosomal protein S1, chloroplastic.
  
 
 0.726
rps1-2
30S ribosomal protein S1, chloroplastic.
  
 
 0.726
RPS1-2
30S ribosomal protein S1, chloroplastic.
  
 
 0.726
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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