STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDA19Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (511 aa)    
Predicted Functional Partners:
HMGB9
High mobility group B protein 9.
   
 0.963
HMGB15
High mobility group B protein 15.
   
 0.963
DAW1-7
Dynein assembly factor with WDR repeat domains 1.
   
 0.930
MA16_Dca020183
MRG domain-containing protein.
   
 0.916
SYD
Chromatin structure-remodeling complex protein SYD.
    
 0.883
SYD-3
Chromatin structure-remodeling complex protein SYD.
    
 0.883
Rb1
Retinoblastoma-related protein.
   
 0.876
MSI1-2
WD-40 repeat-containing protein MSI1.
   
 0.862
MSI4
WD-40 repeat-containing protein MSI4.
   
 0.862
MSI1-3
Histone-binding protein MSI1.
   
 0.862
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.