STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca016733Transketolase, chloroplastic. (741 aa)    
Predicted Functional Partners:
MA16_Dca000913
Transaldolase.
 
 0.986
MA16_Dca018509
Ribulose-phosphate 3-epimerase, chloroplastic.
  
 0.969
MA16_Dca021771
Fructose-1,6-bisphosphatase, cytosolic; Belongs to the FBPase class 1 family.
  
 
 0.967
MA16_Dca013817
Fructose-1,6-bisphosphatase, chloroplastic; Belongs to the FBPase class 1 family.
  
 
 0.967
GAPC2
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.965
GAPB
Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic.
  
 
 0.958
GAPA1
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.958
MA16_Dca014760
Fructose-1,6-bisphosphatase, chloroplastic; Belongs to the FBPase class 1 family.
  
 
 0.957
PGIC1
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.955
PGI1-3
Glucose-6-phosphate isomerase 1, chloroplastic.
  
 
 0.954
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.