STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca010666Metalloendoproteinase 1. (267 aa)    
Predicted Functional Partners:
MA16_Dca015094
ASCH domain-containing protein.
    
 0.695
SYD
Chromatin structure-remodeling complex protein SYD.
   
 0.614
SYD-3
Chromatin structure-remodeling complex protein SYD.
   
 0.614
MA16_Dca021130
DUF1421 domain-containing protein.
    
 0.535
MA16_Dca019679
Pectate lyase.
    
 0.520
MA16_Dca010816
Pectate lyase.
    
 0.520
MA16_Dca014009
Serpin-ZXA; Belongs to the serpin family.
   
 0.501
PAZX
Serpin-ZX; Belongs to the serpin family.
   
 0.501
PAZX-2
Serpin-ZX; Belongs to the serpin family.
   
 0.501
MA16_Dca028999
DNL-type domain-containing protein.
    
 0.437
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.