STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca012593Uncharacterized protein. (372 aa)    
Predicted Functional Partners:
MA16_Dca025788
Uncharacterized protein.
    
   0.790
RPL21M
50S ribosomal protein L21, mitochondrial.
    
 
 0.766
rps9
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.764
rpl18
50S ribosomal protein L18, chloroplastic.
    
 
 0.637
rpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
   0.629
RPL15
50S ribosomal protein L15, chloroplastic.
    
 
 0.623
MA16_Dca015692
Uncharacterized protein.
    
   0.620
RPL6
60S ribosomal protein L6, mitochondrial; Belongs to the universal ribosomal protein uL6 family.
    
   0.620
RPS7
Ribosomal protein S7, mitochondrial.
    
   0.620
RPL19
50S ribosomal protein L19, chloroplastic.
    
   0.620
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.