STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca008439TFIIS N-terminal domain-containing protein. (492 aa)    
Predicted Functional Partners:
MA16_Dca000188
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
   
 0.977
RPB36A-2
DNA-directed RNA polymerase II subunit RPB3-A.
    
 0.870
SPT16
FACT complex subunit SPT16.
   
 0.869
SPT16-2
FACT complex subunit SPT16.
   
 0.869
MA16_Dca000853
Uncharacterized protein.
   
 0.860
MA16_Dca019155
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.839
MED26C-3
Putative mediator of RNA polymerase II transcription subunit 26c.
    
 0.778
MA16_Dca013152
Uncharacterized protein.
    
 0.778
MA16_Dca011751
TPR_REGION domain-containing protein.
   
 0.746
MA16_Dca011753
TPR_REGION domain-containing protein.
   
 0.746
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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