STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca004598Uncharacterized protein. (683 aa)    
Predicted Functional Partners:
CDC5
Cell division cycle 5-like protein.
   
  0.953
PRL1-2
Protein pleiotropic regulatory locus 1.
    
 0.947
MA16_Dca013605
PWI domain-containing protein.
   
 0.923
UBL5
Ubiquitin-like protein 5.
    
  0.911
MA16_Dca019008
DUF1716 domain-containing protein.
    
  0.897
MA16_Dca005726
Uncharacterized protein.
   
 0.886
MA16_Dca014376
MFAP1 domain-containing protein.
   
 0.874
PUB72
U-box domain-containing protein 72.
     
 0.865
MA16_Dca025610
Matrin-type domain-containing protein.
   
 
 0.856
MA16_Dca004480
Uncharacterized protein.
   
  0.819
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.