STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca004607Uncharacterized protein. (136 aa)    
Predicted Functional Partners:
RPL37A
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.659
MA16_Dca016532
Putative cytosolic iron-sulfur protein assembly protein CIAO1 like; Belongs to the WD repeat SEC13 family.
    
 0.613
MA16_Dca015398
Sugar transporter ERD6-like 7; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
 0.592
MA16_Dca019320
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
 0.470
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.
    
 0.407
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.407
MA16_Dca017469
Uncharacterized protein.
    
 0.400
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.