STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca004643NUC173 domain-containing protein. (1053 aa)    
Predicted Functional Partners:
MA16_Dca002278
Uncharacterized protein.
   
 
 0.932
DAW1-12
Dynein assembly factor with WDR repeat domains 1.
   
 
 0.926
MA16_Dca003007
Uncharacterized protein.
   
 
 0.912
MA16_Dca018408
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.870
NOP5-2-2
Putative nucleolar protein 5-2.
   
 
 0.867
MA16_Dca005125
Uncharacterized protein.
   
 
 0.834
MA16_Dca021466
Uncharacterized protein.
   
 
 0.834
MA16_Dca010525
33 kDa ribonucleoprotein, chloroplastic.
   
 
 0.829
MA16_Dca022399
CBF domain-containing protein.
   
 
 0.828
MA16_Dca014622
CBF domain-containing protein.
   
 
 0.825
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.