STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFC2-2Serine/threonine-protein kinase AFC2. (710 aa)    
Predicted Functional Partners:
TTG1
Protein TRANSPARENT TESTA GLABRA 1.
   
 
 0.719
LWD1
WD repeat-containing protein LWD1.
   
 
 0.719
RABH1B
Ras-related protein RABH1b.
    
   0.688
MA16_Dca025178
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
   
 
 0.594
SCE1
SUMO-conjugating enzyme SCE1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.481
SCE1-2
SUMO-conjugating enzyme SCE1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.481
PARV12.8
Peptidyl-prolyl cis-trans isomerase.
    
  0.444
PIN1
Peptidyl-prolyl cis-trans isomerase.
    
  0.444
PARV12.8-2
Peptidyl-prolyl cis-trans isomerase.
    
  0.444
ATM-4
Serine/threonine-protein kinase ATM.
    
  0.410
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.