STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca015953RBR-type E3 ubiquitin transferase. (561 aa)    
Predicted Functional Partners:
UBICEP52-7
Ubiquitin-60S ribosomal protein L40.
    
  0.486
MA16_Dca026049
Ubiquitin-60S ribosomal protein L40.
    
  0.486
UBI3
Ubiquitin-40S ribosomal protein S27a.
    
 0.483
UBI3-2
Ubiquitin-40S ribosomal protein S27a.
    
 0.483
UBI3-3
Ubiquitin-40S ribosomal protein S27a.
    
 0.483
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.