STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAD6Putative cinnamyl alcohol dehydrogenase 6. (738 aa)    
Predicted Functional Partners:
PDC4
Pyruvate decarboxylase 4.
   
 
 0.519
PDC4-2
Pyruvate decarboxylase 4.
   
 
 0.519
ALS1
Acetolactate synthase.
  
 
 0.446
HACL
2-hydroxyacyl-CoA lyase.
  
 
 0.446
HACL-2
2-hydroxyacyl-CoA lyase; Belongs to the TPP enzyme family.
  
 
 0.446
AAE17
Putative acyl-activating enzyme 17, peroxisomal.
    
 0.442
ACS
Acetyl-coenzyme A synthetase.
    
 0.442
MED13
Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.442
AAE18
Putative acyl-activating enzyme 18, peroxisomal.
    
 0.442
SYP71
Syntaxin-71; Belongs to the syntaxin family.
  
 0.415
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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