STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca026706Uncharacterized protein. (443 aa)    
Predicted Functional Partners:
MA16_Dca025872
Uncharacterized protein.
   
 
 0.938
MBB1-3
PsbB mRNA maturation factor Mbb1, chloroplastic.
    
 0.935
MBB1
PsbB mRNA maturation factor Mbb1, chloroplastic.
   
 
 0.917
MA16_Dca013773
SKIP_SNW domain-containing protein.
     
 0.914
PUB49-3
Peptidyl-prolyl cis-trans isomerase-like 2.
   
 0.859
PUB72
U-box domain-containing protein 72.
    
 
 0.691
SRO3
Putative inactive poly [ADP-ribose] polymerase SRO3.
    
 0.668
RBG3-6
Glycine-rich RNA-binding protein 3, mitochondrial.
    
 0.668
MA16_Dca005932
Kin17_mid domain-containing protein.
   
  
 0.576
PUB49-2
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.555
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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