STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAT6Cationic amino acid transporter 6, chloroplastic. (592 aa)    
Predicted Functional Partners:
rpl11
50S ribosomal protein L11, chloroplastic; Belongs to the universal ribosomal protein uL11 family.
      
 0.630
RPL11
50S ribosomal protein L11, chloroplastic; Belongs to the universal ribosomal protein uL11 family.
      
 0.630
PCMP-E95
Pentatricopeptide repeat-containing protein.
      
 0.605
DIT1
Dicarboxylate transporter 1, chloroplastic.
     
 0.601
RPL28
50S ribosomal protein L28, chloroplastic.
     
 0.599
SS4
Putative starch synthase 4, chloroplastic/amyloplastic.
      
 0.587
PLGG1
Plastidal glycolate/glycerate translocator 1, chloroplastic.
     
 0.571
SBE3-2
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic.
      
 0.567
rpl2-A
50S ribosomal protein L2, chloroplastic.
      
 0.566
CDP1
Plastid division protein CDP1, chloroplastic.
      
 0.566
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.