STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca009024Uncharacterized protein. (569 aa)    
Predicted Functional Partners:
HMGB9
High mobility group B protein 9.
    
 0.552
HMGB15
High mobility group B protein 15.
    
 0.552
SYD
Chromatin structure-remodeling complex protein SYD.
    
 0.529
SYD-3
Chromatin structure-remodeling complex protein SYD.
    
 0.529
MA16_Dca025178
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
    
 0.441
CIPK23-3
CBL-interacting serine/threonine-protein kinase 23.
   
 
 0.438
MA16_Dca012574
BTB/POZ domain-containing protein.
  
  0.413
rps11
30S ribosomal protein S11, chloroplastic.
   
  0.405
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.