STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PME41Pectinesterase. (576 aa)    
Predicted Functional Partners:
MA16_Dca027903
Pectate lyase.
  
 
 0.805
MA16_Dca010286
Polygalacturonase.
  
  
 0.802
MA16_Dca010270
Polygalacturonase.
  
  
 0.797
MA16_Dca006968
Pectate lyase.
  
 
  0.748
MA16_Dca026540
Pectate lyase.
  
 
 0.746
MA16_Dca007389
Polygalacturonase.
  
  
 0.738
PMR6
Pectate lyase.
  
 
 0.736
MA16_Dca014139
Pectate lyase.
  
 
 0.729
PMR6-2
Pectate lyase.
  
 
 0.729
MA16_Dca025009
Polygalacturonase.
  
  
 0.728
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.