MA16_Dca013610 protein (Dendrobium catenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MA16_Dca013610

Uncharacterized protein. (110 aa)

Predicted Functional Partners:

MA16_Dca008690

0.972

RKP

0.965

MA16_Dca009563

0.879

MA16_Dca015684

0.802

MA16_Dca017263

0.802

MA16_Dca020176

0.802

MA16_Dca000573

0.802

MA16_Dca016685

0.802

PHYA

0.753

PHYA1

0.753

Your Current Organism:

Dendrobium catenatum

NCBI taxonomy Id: 906689
Other names: D. catenatum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA16_Dca000573	MA16_Dca008690	A0A2I0WU93	A0A2I0W4I7	Uncharacterized protein.	Importin subunit alpha-1b.	0.818
MA16_Dca000573	MA16_Dca009563	A0A2I0WU93	A0A2I0VS01	Uncharacterized protein.	CTLH domain-containing protein.	0.843
MA16_Dca000573	MA16_Dca013610	A0A2I0WU93	A0A2I0VUV1	Uncharacterized protein.	Uncharacterized protein.	0.802
MA16_Dca000573	RKP	A0A2I0WU93	A0A2I0WVI2	Uncharacterized protein.	E3 ubiquitin-protein ligase RKP.	0.819
MA16_Dca008690	MA16_Dca000573	A0A2I0W4I7	A0A2I0WU93	Importin subunit alpha-1b.	Uncharacterized protein.	0.818
MA16_Dca008690	MA16_Dca009563	A0A2I0W4I7	A0A2I0VS01	Importin subunit alpha-1b.	CTLH domain-containing protein.	0.798
MA16_Dca008690	MA16_Dca013610	A0A2I0W4I7	A0A2I0VUV1	Importin subunit alpha-1b.	Uncharacterized protein.	0.972
MA16_Dca008690	MA16_Dca015684	A0A2I0W4I7	A0A2I0V8F3	Importin subunit alpha-1b.	Uncharacterized protein.	0.818
MA16_Dca008690	MA16_Dca016685	A0A2I0W4I7	A0A2I0XHW9	Importin subunit alpha-1b.	Uncharacterized protein.	0.818
MA16_Dca008690	MA16_Dca017263	A0A2I0W4I7	A0A2I0VU66	Importin subunit alpha-1b.	CTLH domain-containing protein.	0.818
MA16_Dca008690	MA16_Dca020176	A0A2I0W4I7	A0A2I0VUB4	Importin subunit alpha-1b.	Uncharacterized protein.	0.818
MA16_Dca008690	RKP	A0A2I0W4I7	A0A2I0WVI2	Importin subunit alpha-1b.	E3 ubiquitin-protein ligase RKP.	0.969
MA16_Dca009563	MA16_Dca000573	A0A2I0VS01	A0A2I0WU93	CTLH domain-containing protein.	Uncharacterized protein.	0.843
MA16_Dca009563	MA16_Dca008690	A0A2I0VS01	A0A2I0W4I7	CTLH domain-containing protein.	Importin subunit alpha-1b.	0.798
MA16_Dca009563	MA16_Dca013610	A0A2I0VS01	A0A2I0VUV1	CTLH domain-containing protein.	Uncharacterized protein.	0.879
MA16_Dca009563	MA16_Dca015684	A0A2I0VS01	A0A2I0V8F3	CTLH domain-containing protein.	Uncharacterized protein.	0.843
MA16_Dca009563	MA16_Dca016685	A0A2I0VS01	A0A2I0XHW9	CTLH domain-containing protein.	Uncharacterized protein.	0.802
MA16_Dca009563	MA16_Dca017263	A0A2I0VS01	A0A2I0VU66	CTLH domain-containing protein.	CTLH domain-containing protein.	0.802
MA16_Dca009563	MA16_Dca020176	A0A2I0VS01	A0A2I0VUB4	CTLH domain-containing protein.	Uncharacterized protein.	0.802
MA16_Dca009563	RKP	A0A2I0VS01	A0A2I0WVI2	CTLH domain-containing protein.	E3 ubiquitin-protein ligase RKP.	0.965