STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca017691Uncharacterized protein. (382 aa)    
Predicted Functional Partners:
MA16_Dca017237
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.983
MMS21
E3 SUMO-protein ligase MMS21.
    
 0.982
SMC2-2
Structural maintenance of chromosomes protein 2-2.
    
 0.844
MA16_Dca016622
Uncharacterized protein.
    
 0.844
MA16_Dca015223
SMC_N domain-containing protein.
    
 0.843
MA16_Dca003568
MAGE domain-containing protein.
    
 0.837
MA16_Dca028743
LEA_2 domain-containing protein.
    
 0.777
MA16_Dca015068
LEA_2 domain-containing protein.
    
 0.777
MA16_Dca003509
Glucan endo-1,3-beta-glucosidase 1.
    
 0.777
MA16_Dca027710
Histone H1.2.
    
 0.777
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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