STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca016819Uncharacterized protein. (764 aa)    
Predicted Functional Partners:
SYD
Chromatin structure-remodeling complex protein SYD.
   
 0.580
SYD-3
Chromatin structure-remodeling complex protein SYD.
   
 0.580
CIPK23-3
CBL-interacting serine/threonine-protein kinase 23.
    
 0.524
MA16_Dca006066
Uncharacterized protein.
  
   
0.483
Mut11-8
Protein Mut11.
    
 0.464
MA16_Dca012228
B30.2/SPRY domain-containing protein.
    
 0.463
MA16_Dca004069
TATA box-binding protein-associated factor RNA polymerase I subunit B.
  
 
  0.421
MA16_Dca015398
Sugar transporter ERD6-like 7; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
    
 0.413
SUVR5
Histone-lysine N-methyltransferase SUVR5.
   
 0.405
ELF6
Putative lysine-specific demethylase ELF6.
    
 0.402
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.