STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBC16-2Putative ubiquitin-conjugating enzyme E2 16; Belongs to the ubiquitin-conjugating enzyme family. (162 aa)    
Predicted Functional Partners:
UBC16
Putative ubiquitin-conjugating enzyme E2 16; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.901
UBC18
Putative ubiquitin-conjugating enzyme E2 18; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.900
UPL4
E3 ubiquitin-protein ligase UPL4.
    
 0.846
UPL3
E3 ubiquitin-protein ligase UPL3.
    
 0.843
UBICEP52-7
Ubiquitin-60S ribosomal protein L40.
   
 0.731
MA16_Dca026049
Ubiquitin-60S ribosomal protein L40.
   
 0.731
ATG7
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
   
 0.690
ECR1
NEDD8-activating enzyme E1 catalytic subunit.
   
 0.690
MA16_Dca000701
Ubiquitin-like modifier-activating enzyme 5.
   
 0.688
RANGAP1-2
RAN GTPase-activating protein 1.
    
 0.687
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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