STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca008670Thioredoxin M3, chloroplastic. (190 aa)    
Predicted Functional Partners:
BAS1
2-Cys peroxiredoxin BAS1, chloroplastic.
  
 0.763
BAS1-2
2-Cys peroxiredoxin BAS1, chloroplastic.
  
 0.763
MA16_Dca023830
Thioredoxin reductase.
  
 
 0.752
MA16_Dca007864
Thioredoxin F, chloroplastic.
  
 
 0.698
TDX-2
TPR repeat-containing thioredoxin TDX.
  
 
 0.657
CC-1
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 
 0.651
CC-1-2
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 
 0.651
HO1
Heme oxygenase 1, chloroplastic.
      
 0.649
HO1-2
Heme oxygenase 1, chloroplastic.
      
 0.649
MA16_Dca023214
Thioredoxin H2-2.
  
 
 0.636
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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