STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca021734MAT1 domain-containing protein. (182 aa)    
Predicted Functional Partners:
CDKD-1
Cyclin-dependent kinase D-1; Belongs to the protein kinase superfamily.
   
 0.983
MA16_Dca024809
General transcription factor IIH subunit.
   
 0.983
CYCH1-1
Cyclin-H1-1; Belongs to the cyclin family.
   
 0.980
MA16_Dca003300
Uncharacterized protein.
    
 0.980
UVH6
DNA repair helicase UVH6.
    
 0.972
TFB1-1
Putative RNA polymerase II transcription factor B subunit 1-1.
    
 0.972
MA16_Dca024391
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.972
MA16_Dca013528
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.965
MA16_Dca014514
Transcription initiation factor TFIIF subunit beta.
   
 0.958
MA16_Dca018068
RPOL4c domain-containing protein.
    
 0.958
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.