MA16_Dca006272 protein (Dendrobium catenatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MA16_Dca006272

Uncharacterized protein. (344 aa)

Predicted Functional Partners:

MA16_Dca018583

0.996

MA16_Dca017719

0.932

TBP

0.904

RPB205-2

0.898

MA16_Dca020480

0.888

MA16_Dca015911

0.886

MA16_Dca023065

0.870

MA16_Dca012566

0.860

MA16_Dca002822

0.843

RPB135

0.840

Your Current Organism:

Dendrobium catenatum

NCBI taxonomy Id: 906689
Other names: D. catenatum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA16_Dca002822	MA16_Dca006272	A0A2I0X8Q7	A0A2I0W9D8	Uncharacterized protein.	Uncharacterized protein.	0.843
MA16_Dca002822	MA16_Dca012566	A0A2I0X8Q7	A0A2I0VKN1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.995
MA16_Dca002822	MA16_Dca015911	A0A2I0X8Q7	A0A2I0VP69	Uncharacterized protein.	Uncharacterized protein.	0.996
MA16_Dca002822	MA16_Dca017719	A0A2I0X8Q7	A0A2I0VY76	Uncharacterized protein.	SANT domain-containing protein.	0.978
MA16_Dca002822	MA16_Dca018583	A0A2I0X8Q7	A0A2I0XCT0	Uncharacterized protein.	Uncharacterized protein.	0.848
MA16_Dca002822	MA16_Dca020480	A0A2I0X8Q7	A0A2I0WID4	Uncharacterized protein.	Uncharacterized protein.	0.997
MA16_Dca002822	MA16_Dca023065	A0A2I0X8Q7	A0A2I0VHT0	Uncharacterized protein.	Uncharacterized protein.	0.997
MA16_Dca002822	RPB135	A0A2I0X8Q7	A0A2I0W189	Uncharacterized protein.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.996
MA16_Dca002822	RPB205-2	A0A2I0X8Q7	A0A2I0VRD1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
MA16_Dca002822	TBP	A0A2I0X8Q7	A0A2I0WRT8	Uncharacterized protein.	TATA-box-binding protein.	0.959
MA16_Dca006272	MA16_Dca002822	A0A2I0W9D8	A0A2I0X8Q7	Uncharacterized protein.	Uncharacterized protein.	0.843
MA16_Dca006272	MA16_Dca012566	A0A2I0W9D8	A0A2I0VKN1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.860
MA16_Dca006272	MA16_Dca015911	A0A2I0W9D8	A0A2I0VP69	Uncharacterized protein.	Uncharacterized protein.	0.886
MA16_Dca006272	MA16_Dca017719	A0A2I0W9D8	A0A2I0VY76	Uncharacterized protein.	SANT domain-containing protein.	0.932
MA16_Dca006272	MA16_Dca018583	A0A2I0W9D8	A0A2I0XCT0	Uncharacterized protein.	Uncharacterized protein.	0.996
MA16_Dca006272	MA16_Dca020480	A0A2I0W9D8	A0A2I0WID4	Uncharacterized protein.	Uncharacterized protein.	0.888
MA16_Dca006272	MA16_Dca023065	A0A2I0W9D8	A0A2I0VHT0	Uncharacterized protein.	Uncharacterized protein.	0.870
MA16_Dca006272	RPB135	A0A2I0W9D8	A0A2I0W189	Uncharacterized protein.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.840
MA16_Dca006272	RPB205-2	A0A2I0W9D8	A0A2I0VRD1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.898
MA16_Dca006272	TBP	A0A2I0W9D8	A0A2I0WRT8	Uncharacterized protein.	TATA-box-binding protein.	0.904