STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca017465Putative serine/threonine-protein kinase. (547 aa)    
Predicted Functional Partners:
CYCT1-1
Cyclin-T1-4; Belongs to the cyclin family.
    
 0.709
CYCT1-3
Cyclin-T1-3.
    
 0.709
CYCT1-3-2
Cyclin-T1-3; Belongs to the cyclin family.
    
 0.709
CDKD-1
Cyclin-dependent kinase D-1; Belongs to the protein kinase superfamily.
  
 
0.634
MA16_Dca019155
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.585
CYCH1-1
Cyclin-H1-1; Belongs to the cyclin family.
    
 0.572
DDB1
DNA damage-binding protein 1.
    
 
 0.555
RPB36A-2
DNA-directed RNA polymerase II subunit RPB3-A.
   
 
 0.551
MA16_Dca018497
HUA2-like protein 2.
    
 
 0.500
HUA2
ENHANCER OF AG-4 protein 2.
    
 
 0.500
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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