STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CP12-2Calvin cycle protein CP12-2, chloroplastic. (129 aa)    
Predicted Functional Partners:
GAPB
Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic.
  
 
 0.818
MA16_Dca002546
Phosphoribulokinase.
   
 
 0.800
GAPA1
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 
 0.742
GAPC2
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 
 0.523
CRTISO2
Prolycopene isomerase 2, chloroplastic.
  
     0.501
TIC20-II
Protein TIC 20-II, chloroplastic.
  
 
 
 0.496
MA16_Dca021759
CAAD domain-containing protein.
  
     0.478
MA16_Dca013498
CAAD domain-containing protein.
  
     0.473
MA16_Dca002387
Uncharacterized protein.
  
     0.470
MA16_Dca014715
CAAD domain-containing protein.
  
    0.460
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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