STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca0162003-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family. (529 aa)    
Predicted Functional Partners:
SK3
Shikimate kinase 3, chloroplastic.
  
 
 0.982
MA16_Dca015447
Chorismate synthase.
 
 
 0.928
MA16_Dca023782
3-dehydroquinate synthase.
 
 
  
 0.928
CM1
Chorismate mutase.
  
 
 0.754
DHAPS-1
Phospho-2-dehydro-3-deoxyheptonate aldolase.
   
 0.729
MA16_Dca003918
Phospho-2-dehydro-3-deoxyheptonate aldolase.
   
 0.729
DHAPS-1-2
Phospho-2-dehydro-3-deoxyheptonate aldolase.
   
 0.729
DRTS
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.699
DRTS-2
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.699
MA16_Dca012998
Nicotinamide mononucleotide adenylyltransferase.
  
  
 0.671
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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