STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALMT2Aluminum-activated malate transporter 2. (252 aa)    
Predicted Functional Partners:
MA16_Dca001664
SAGA-associated factor 11.
    
 
 0.573
MA16_Dca005798
Uncharacterized protein.
   
 
 0.570
MA16_Dca014910
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 
 0.559
MA16_Dca001093
TAF domain-containing protein.
    
 
 0.547
DAW1-19
Dynein assembly factor with WDR repeat domains 1.
    
 
 0.544
ADA2
Transcriptional adapter.
    
 
 0.537
MA16_Dca002597
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
   
 
 0.527
MA16_Dca027268
Uncharacterized protein.
   
 
 0.527
MA16_Dca004069
TATA box-binding protein-associated factor RNA polymerase I subunit B.
    
 
 0.506
MA16_Dca010531
SGF29 C-terminal domain-containing protein.
    
 
 0.506
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.