STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIP8E3 ubiquitin-protein ligase CIP8. (274 aa)    
Predicted Functional Partners:
CML3
Calmodulin-like protein 3.
      
 0.482
ATL3
RING-H2 finger protein ATL3.
  
     0.450
ATL77
RING-H2 finger protein ATL77.
  
     0.426
ATL74-3
RING-H2 finger protein ATL74.
  
     0.415
ATL3-3
RING-H2 finger protein ATL3.
  
     0.414
MA16_Dca013371
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
      
 0.412
MA16_Dca015484
Uncharacterized protein.
      
 0.412
MA16_Dca026635
Uncharacterized protein.
      
 0.410
MA16_Dca004642
Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.
      
 0.410
ARF1-2
ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.
      
 0.410
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.